What is GenReport?
GenReport is a website that parses variants from text and PDF files, converts them to a consistent genomic format, searches for additional information for each variant, and displays the results in a compact and exportable table.
Highlights
- Advanced algorithm that converts coding variants to their genomic equivalent.
- Toggle genome build for different views on the same results.
- HGVS conversion does not depend on the variant's presence in an existing database.
- Sortable results.
- Simple interface with two entry points (parse text or parse pdf) to the same pipeline.
Getting Started
- Try uploading an academic paper using the "Parse PDF" input.
- Try pasting variants into the "Parse Text" input.
- Sort results by clicking one or more column headers (hold shift if selecting multiple).
- Click on parsed rsids to go directly to their NCBI page.
- Click "Save as CSV" button to save table for use with your favorite spreadsheet application.
Variants That Will Be Parsed
- rsids, e.g.
rs6065 - accession:HGVS name, e.g.
NM_004018.2:c.1311-29_1311-20delTTTCTTTTTT
Troubleshooting
Problem: I selected a genome build from the drop down menu, but there are still variants displayed with a different build.
Response: If a variant is not fully compatible with the build you select, it will display with a different build.
Problem: Some of the values in the results table are abbreviated, and I want to see the full value.
Response: Hover over the abbreviated value for a few seconds, and you will see the full value. The full values are also used when saving to a CSV file.